You may need to reverse the state of the endstops in the Configuration.h to false, re-compile, and re-flash.
I have 3 wire endstops with LEDs.
// Mechanical endstop with COM to ground and NC to Signal uses “false” here (most common setup).
#define X_MIN_ENDSTOP_INVERTING true // set to true to invert the logic of the endstop.
#define Y_MIN_ENDSTOP_INVERTING true // set to true to invert the logic of the endstop.
#define Z_MIN_ENDSTOP_INVERTING true // set to true to invert the logic of the endstop.
#define X_MAX_ENDSTOP_INVERTING true // set to true to invert the logic of the endstop.
#define Y_MAX_ENDSTOP_INVERTING true// set to true to invert the logic of the endstop.
#define Z_MAX_ENDSTOP_INVERTING false // set to true to invert the logic of the endstop.
#define Z_MIN_PROBE_ENDSTOP_INVERTING true // set to true to invert the logic of the probe.